Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
TFF3Q07654 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
TFF3Q07654 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 MFF-223ENST00000524634 647 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.03□□□□□ -0.16
TFF3Q07654 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.03□□□□□ -0.16
TFF3Q07654 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 AC018665.1-201ENST00000622927 1362 ntBASIC14.03□□□□□ -0.16
TFF3Q07654 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
TFF3Q07654 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
TFF3Q07654 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.03□□□□□ -0.16
TFF3Q07654 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.03□□□□□ -0.16
TFF3Q07654 AC005622.1-201ENST00000636801 1703 ntBASIC14.03□□□□□ -0.16
TFF3Q07654 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC14.03□□□□□ -0.16
TFF3Q07654 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 AL603756.1-201ENST00000606511 2163 ntBASIC14.03□□□□□ -0.16
TFF3Q07654 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC14.03□□□□□ -0.16
TFF3Q07654 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
TFF3Q07654 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.03□□□□□ -0.16
TFF3Q07654 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
TFF3Q07654 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.02□□□□□ -0.16
TFF3Q07654 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.02□□□□□ -0.16
TFF3Q07654 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC14.02□□□□□ -0.16
TFF3Q07654 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
TFF3Q07654 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.02□□□□□ -0.16
TFF3Q07654 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
TFF3Q07654 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
TFF3Q07654 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.02□□□□□ -0.16
TFF3Q07654 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
TFF3Q07654 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
TFF3Q07654 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 AL442647.2-201ENST00000429864 857 ntBASIC14.02□□□□□ -0.17
TFF3Q07654 KRT43P-201ENST00000434019 910 ntBASIC14.02□□□□□ -0.17
TFF3Q07654 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.02□□□□□ -0.17
TFF3Q07654 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.02□□□□□ -0.17
TFF3Q07654 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.02□□□□□ -0.17
TFF3Q07654 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.02□□□□□ -0.17
TFF3Q07654 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.02□□□□□ -0.17
TFF3Q07654 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.02□□□□□ -0.17
TFF3Q07654 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 AC233724.13-201ENST00000598383 410 ntBASIC14.02□□□□□ -0.17
TFF3Q07654 LINC01115-203ENST00000606068 577 ntBASIC14.02□□□□□ -0.17
TFF3Q07654 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 AC079328.2-201ENST00000561241 3354 ntBASIC14.02□□□□□ -0.17
TFF3Q07654 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
TFF3Q07654 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.02□□□□□ -0.17
TFF3Q07654 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC14.02□□□□□ -0.17
TFF3Q07654 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
TFF3Q07654 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
TFF3Q07654 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
TFF3Q07654 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms