Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
HDAC4P56524 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.73■□□□□ 0.27
HDAC4P56524 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 AP003680.1-201ENST00000598970 3660 ntBASIC16.73■□□□□ 0.27
HDAC4P56524 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC4P56524 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
HDAC4P56524 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.72■□□□□ 0.27
HDAC4P56524 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 AC018892.3-201ENST00000623986 2499 ntBASIC16.72■□□□□ 0.27
HDAC4P56524 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.72■□□□□ 0.27
HDAC4P56524 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
HDAC4P56524 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.72■□□□□ 0.27
HDAC4P56524 AC069262.1-201ENST00000539058 672 ntBASIC16.72■□□□□ 0.27
HDAC4P56524 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 AL133215.2-201ENST00000609242 977 ntBASIC16.72■□□□□ 0.27
HDAC4P56524 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HDAC4P56524 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.72■□□□□ 0.27
HDAC4P56524 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC4P56524 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HDAC4P56524 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.72■□□□□ 0.27
HDAC4P56524 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HDAC4P56524 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 AL136379.1-201ENST00000623471 2642 ntBASIC16.71■□□□□ 0.27
HDAC4P56524 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 SPDYE7P-202ENST00000420373 878 ntBASIC16.71■□□□□ 0.27
HDAC4P56524 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.71■□□□□ 0.27
HDAC4P56524 EEF1DP4-201ENST00000446006 880 ntBASIC16.71■□□□□ 0.27
HDAC4P56524 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HDAC4P56524 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.71■□□□□ 0.27
HDAC4P56524 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.71■□□□□ 0.27
HDAC4P56524 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.71■□□□□ 0.27
HDAC4P56524 REXO1L1P-202ENST00000608646 1974 ntBASIC16.71■□□□□ 0.27
HDAC4P56524 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC4P56524 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.71■□□□□ 0.26
HDAC4P56524 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC4P56524 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.71■□□□□ 0.26
HDAC4P56524 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.26
HDAC4P56524 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC4P56524 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC4P56524 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
HDAC4P56524 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.7■□□□□ 0.26
HDAC4P56524 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HDAC4P56524 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms