Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC22.42■■□□□ 1.18
CLTCL1P53675 AP005019.2-201ENST00000615104 511 ntBASIC22.42■■□□□ 1.18
CLTCL1P53675 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
CLTCL1P53675 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
CLTCL1P53675 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 MIR1202-201ENST00000408529 83 ntBASIC22.42■■□□□ 1.18
CLTCL1P53675 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC22.42■■□□□ 1.18
CLTCL1P53675 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC22.42■■□□□ 1.18
CLTCL1P53675 MTX1P1-201ENST00000440904 838 ntBASIC22.42■■□□□ 1.18
CLTCL1P53675 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC22.42■■□□□ 1.18
CLTCL1P53675 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC22.42■■□□□ 1.18
CLTCL1P53675 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC22.42■■□□□ 1.18
CLTCL1P53675 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC22.42■■□□□ 1.18
CLTCL1P53675 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC22.42■■□□□ 1.18
CLTCL1P53675 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC22.42■■□□□ 1.18
CLTCL1P53675 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC22.42■■□□□ 1.18
CLTCL1P53675 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC22.42■■□□□ 1.18
CLTCL1P53675 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
CLTCL1P53675 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
CLTCL1P53675 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC22.41■■□□□ 1.18
CLTCL1P53675 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC22.41■■□□□ 1.18
CLTCL1P53675 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC22.41■■□□□ 1.18
CLTCL1P53675 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC22.41■■□□□ 1.18
CLTCL1P53675 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
CLTCL1P53675 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
CLTCL1P53675 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC22.41■■□□□ 1.18
CLTCL1P53675 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC22.41■■□□□ 1.18
CLTCL1P53675 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC22.41■■□□□ 1.18
CLTCL1P53675 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC22.41■■□□□ 1.18
CLTCL1P53675 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC22.41■■□□□ 1.18
CLTCL1P53675 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
CLTCL1P53675 AL139099.5-201ENST00000635274 300 ntBASIC22.41■■□□□ 1.18
CLTCL1P53675 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC22.4■■□□□ 1.18
CLTCL1P53675 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC22.4■■□□□ 1.18
CLTCL1P53675 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 HARS-202ENST00000415192 1401 ntTSL 2 BASIC22.4■■□□□ 1.18
CLTCL1P53675 EIF3FP3-201ENST00000434851 1086 ntBASIC22.4■■□□□ 1.18
CLTCL1P53675 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC22.4■■□□□ 1.18
CLTCL1P53675 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC22.4■■□□□ 1.18
CLTCL1P53675 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC22.4■■□□□ 1.18
CLTCL1P53675 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
CLTCL1P53675 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC22.4■■□□□ 1.18
CLTCL1P53675 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC22.4■■□□□ 1.18
CLTCL1P53675 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
CLTCL1P53675 AL662844.4-201ENST00000606367 2838 ntBASIC22.39■■□□□ 1.18
CLTCL1P53675 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CLTCL1P53675 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.18
CLTCL1P53675 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CLTCL1P53675 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
CLTCL1P53675 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC22.39■■□□□ 1.18
CLTCL1P53675 B9D1-203ENST00000395615 805 ntTSL 3 BASIC22.39■■□□□ 1.18
CLTCL1P53675 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC22.39■■□□□ 1.18
CLTCL1P53675 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CLTCL1P53675 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC22.39■■□□□ 1.18
CLTCL1P53675 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
CLTCL1P53675 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC22.39■■□□□ 1.18
CLTCL1P53675 BX539320.1-201ENST00000623759 877 ntBASIC22.39■■□□□ 1.18
CLTCL1P53675 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
CLTCL1P53675 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC22.39■■□□□ 1.17
CLTCL1P53675 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC22.39■■□□□ 1.17
CLTCL1P53675 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
CLTCL1P53675 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC22.39■■□□□ 1.17
CLTCL1P53675 MIR4741-201ENST00000579822 90 ntBASIC22.39■■□□□ 1.17
CLTCL1P53675 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
CLTCL1P53675 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC22.38■■□□□ 1.17
CLTCL1P53675 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms