Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.91■□□□□ 0.3
LIG3P49916 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.91■□□□□ 0.3
LIG3P49916 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.91■□□□□ 0.3
LIG3P49916 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.91■□□□□ 0.3
LIG3P49916 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LIG3P49916 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG3P49916 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 AC015656.1-201ENST00000624209 3578 ntBASIC16.91■□□□□ 0.3
LIG3P49916 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG3P49916 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.91■□□□□ 0.3
LIG3P49916 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LIG3P49916 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LIG3P49916 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 AL596087.1-201ENST00000400979 1969 ntBASIC16.9■□□□□ 0.3
LIG3P49916 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.9■□□□□ 0.3
LIG3P49916 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 HTR5BP-201ENST00000430851 1154 ntBASIC16.9■□□□□ 0.3
LIG3P49916 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 AC124947.2-201ENST00000547118 1133 ntBASIC16.9■□□□□ 0.3
LIG3P49916 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.9■□□□□ 0.3
LIG3P49916 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.9■□□□□ 0.3
LIG3P49916 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.9■□□□□ 0.3
LIG3P49916 MIR4515-201ENST00000584082 81 ntBASIC16.9■□□□□ 0.3
LIG3P49916 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.9■□□□□ 0.3
LIG3P49916 AC068137.2-201ENST00000605408 478 ntBASIC16.9■□□□□ 0.3
LIG3P49916 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 AL645728.2-201ENST00000641974 660 ntBASIC16.9■□□□□ 0.3
LIG3P49916 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LIG3P49916 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LIG3P49916 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIG3P49916 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.89■□□□□ 0.3
LIG3P49916 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
LIG3P49916 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
LIG3P49916 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LIG3P49916 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
LIG3P49916 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
LIG3P49916 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG3P49916 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 AL353732.1-201ENST00000569618 1459 ntBASIC16.89■□□□□ 0.29
LIG3P49916 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.89■□□□□ 0.29
LIG3P49916 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.89■□□□□ 0.29
LIG3P49916 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
LIG3P49916 AL031432.2-201ENST00000566714 459 ntBASIC16.89■□□□□ 0.29
LIG3P49916 AL928711.1-201ENST00000570165 459 ntBASIC16.89■□□□□ 0.29
LIG3P49916 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 AL691403.2-201ENST00000618460 490 ntBASIC16.89■□□□□ 0.29
LIG3P49916 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LIG3P49916 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms