Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PTPN9P43378 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
PTPN9P43378 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.58■□□□□ 0.24
PTPN9P43378 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.58■□□□□ 0.24
PTPN9P43378 MIR6069-201ENST00000620069 79 ntBASIC16.58■□□□□ 0.24
PTPN9P43378 AL033527.5-202ENST00000641632 1098 ntBASIC16.58■□□□□ 0.24
PTPN9P43378 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.58■□□□□ 0.24
PTPN9P43378 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
PTPN9P43378 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PTPN9P43378 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.58■□□□□ 0.24
PTPN9P43378 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.58■□□□□ 0.24
PTPN9P43378 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.58■□□□□ 0.24
PTPN9P43378 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTPN9P43378 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PTPN9P43378 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.57■□□□□ 0.24
PTPN9P43378 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.57■□□□□ 0.24
PTPN9P43378 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PTPN9P43378 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.57■□□□□ 0.24
PTPN9P43378 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.57■□□□□ 0.24
PTPN9P43378 AP003680.1-201ENST00000598970 3660 ntBASIC16.57■□□□□ 0.24
PTPN9P43378 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.57■□□□□ 0.24
PTPN9P43378 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PTPN9P43378 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.57■□□□□ 0.24
PTPN9P43378 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PTPN9P43378 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 AC132872.4-202ENST00000622924 2756 ntBASIC16.56■□□□□ 0.24
PTPN9P43378 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN9P43378 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.56■□□□□ 0.24
PTPN9P43378 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN9P43378 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 AC092580.3-201ENST00000430932 139 ntBASIC16.56■□□□□ 0.24
PTPN9P43378 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.56■□□□□ 0.24
PTPN9P43378 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.56■□□□□ 0.24
PTPN9P43378 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.56■□□□□ 0.24
PTPN9P43378 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.56■□□□□ 0.24
PTPN9P43378 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.56■□□□□ 0.24
PTPN9P43378 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.56■□□□□ 0.24
PTPN9P43378 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.56■□□□□ 0.24
PTPN9P43378 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
PTPN9P43378 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN9P43378 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PTPN9P43378 CICP13-201ENST00000422015 2789 ntBASIC16.56■□□□□ 0.24
PTPN9P43378 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 AC020658.6-201ENST00000623564 1870 ntBASIC16.56■□□□□ 0.24
PTPN9P43378 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.56■□□□□ 0.24
PTPN9P43378 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PTPN9P43378 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms