Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
COL9A1P20849 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 AC105020.1-201ENST00000435356 2205 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
COL9A1P20849 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 U82695.1-201ENST00000635752 1889 ntBASIC16.31■□□□□ 0.2
COL9A1P20849 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC16.31■□□□□ 0.2
COL9A1P20849 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
COL9A1P20849 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 GGT3P-204ENST00000453783 1664 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL9A1P20849 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 RNF216P1-203ENST00000404404 2427 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.3■□□□□ 0.2
COL9A1P20849 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.3■□□□□ 0.2
COL9A1P20849 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.3■□□□□ 0.2
COL9A1P20849 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL9A1P20849 AC134312.5-201ENST00000568031 1313 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 AC007274.2-201ENST00000421675 662 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 C2orf27AP3-201ENST00000434123 579 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC16.3■□□□□ 0.2
COL9A1P20849 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 RN7SL181P-201ENST00000462921 277 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.3■□□□□ 0.2
COL9A1P20849 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 AC106794.1-201ENST00000506935 792 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 AC106760.1-201ENST00000508690 800 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 ALG1L13P-202ENST00000519320 584 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
COL9A1P20849 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 AC018695.6-201ENST00000614011 534 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 AL354718.3-201ENST00000616414 581 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 CR382287.1-201ENST00000623954 586 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
COL9A1P20849 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
COL9A1P20849 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.3■□□□□ 0.2
COL9A1P20849 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.3■□□□□ 0.2
COL9A1P20849 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
COL9A1P20849 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 AP001094.4-201ENST00000579008 2176 ntBASIC16.3■□□□□ 0.2
COL9A1P20849 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
COL9A1P20849 AC018735.1-201ENST00000437208 1502 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
COL9A1P20849 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
COL9A1P20849 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
COL9A1P20849 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
COL9A1P20849 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.29■□□□□ 0.2
COL9A1P20849 RPSAP31-201ENST00000416648 895 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 AC016700.1-201ENST00000429424 312 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
COL9A1P20849 HIST3H2BA-201ENST00000436555 524 ntBASIC16.29■□□□□ 0.2
COL9A1P20849 AC108718.1-201ENST00000482382 554 ntTSL 4 BASIC16.29■□□□□ 0.2
COL9A1P20849 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.29■□□□□ 0.2
COL9A1P20849 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
COL9A1P20849 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms