Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 AC069262.1-201ENST00000539058 672 ntBASIC18.84■□□□□ 0.61
HMGB1P09429 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.84■□□□□ 0.61
HMGB1P09429 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.84■□□□□ 0.61
HMGB1P09429 AL596442.2-201ENST00000610240 980 ntBASIC18.84■□□□□ 0.61
HMGB1P09429 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HMGB1P09429 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.84■□□□□ 0.61
HMGB1P09429 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.84■□□□□ 0.61
HMGB1P09429 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.83■□□□□ 0.61
HMGB1P09429 CICP13-201ENST00000422015 2789 ntBASIC18.83■□□□□ 0.61
HMGB1P09429 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
HMGB1P09429 KRT8P12-202ENST00000472924 1397 ntBASIC18.83■□□□□ 0.61
HMGB1P09429 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB1P09429 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB1P09429 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB1P09429 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC18.83■□□□□ 0.61
HMGB1P09429 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB1P09429 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
HMGB1P09429 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC18.83■□□□□ 0.61
HMGB1P09429 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.83■□□□□ 0.61
HMGB1P09429 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HMGB1P09429 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC18.83■□□□□ 0.6
HMGB1P09429 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.83■□□□□ 0.6
HMGB1P09429 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGB1P09429 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGB1P09429 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.83■□□□□ 0.6
HMGB1P09429 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC18.83■□□□□ 0.6
HMGB1P09429 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.83■□□□□ 0.6
HMGB1P09429 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
HMGB1P09429 LINC00628-201ENST00000628516 1289 ntBASIC18.83■□□□□ 0.6
HMGB1P09429 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HMGB1P09429 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGB1P09429 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
HMGB1P09429 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
HMGB1P09429 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGB1P09429 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.83■□□□□ 0.6
HMGB1P09429 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC18.83■□□□□ 0.6
HMGB1P09429 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HMGB1P09429 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HMGB1P09429 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
HMGB1P09429 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
HMGB1P09429 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HMGB1P09429 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGB1P09429 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 AC136604.1-201ENST00000418535 575 ntBASIC18.82■□□□□ 0.6
HMGB1P09429 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGB1P09429 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGB1P09429 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.82■□□□□ 0.6
HMGB1P09429 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
HMGB1P09429 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 AC023511.2-201ENST00000618803 211 ntBASIC18.82■□□□□ 0.6
HMGB1P09429 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.82■□□□□ 0.6
HMGB1P09429 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGB1P09429 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HMGB1P09429 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGB1P09429 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGB1P09429 AC105250.1-201ENST00000509378 2057 ntBASIC18.81■□□□□ 0.6
HMGB1P09429 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.81■□□□□ 0.6
HMGB1P09429 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGB1P09429 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGB1P09429 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.81■□□□□ 0.6
HMGB1P09429 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGB1P09429 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.81■□□□□ 0.6
HMGB1P09429 HNRNPUP1-201ENST00000554987 333 ntBASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms