Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD4P09016 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.56□□□□□ -0.08
HOXD4P09016 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HOXD4P09016 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD4P09016 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HOXD4P09016 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.56□□□□□ -0.08
HOXD4P09016 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD4P09016 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.56□□□□□ -0.08
HOXD4P09016 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.56□□□□□ -0.08
HOXD4P09016 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD4P09016 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HOXD4P09016 AL365330.1-201ENST00000607459 531 ntBASIC14.56□□□□□ -0.08
HOXD4P09016 AL133215.2-201ENST00000609242 977 ntBASIC14.56□□□□□ -0.08
HOXD4P09016 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
HOXD4P09016 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
HOXD4P09016 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
HOXD4P09016 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
HOXD4P09016 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.56□□□□□ -0.08
HOXD4P09016 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 RPL37AP1-201ENST00000412502 279 ntBASIC14.55□□□□□ -0.08
HOXD4P09016 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 AL359881.2-201ENST00000602973 570 ntBASIC14.55□□□□□ -0.08
HOXD4P09016 AL008721.1-201ENST00000609964 604 ntBASIC14.55□□□□□ -0.08
HOXD4P09016 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.55□□□□□ -0.08
HOXD4P09016 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.55□□□□□ -0.08
HOXD4P09016 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HOXD4P09016 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
HOXD4P09016 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 FER1L4-210ENST00000615531 5998 ntBASIC14.55□□□□□ -0.08
HOXD4P09016 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 CICP14-201ENST00000629111 2732 ntBASIC14.55□□□□□ -0.08
HOXD4P09016 LINC01144-201ENST00000626198 1710 ntBASIC14.55□□□□□ -0.08
HOXD4P09016 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
HOXD4P09016 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
HOXD4P09016 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
HOXD4P09016 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HOXD4P09016 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
HOXD4P09016 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD4P09016 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.54□□□□□ -0.08
HOXD4P09016 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms