Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AC074338.1-201ENST00000416825 156 ntBASIC18.45■□□□□ 0.54
CTDNEP1O95476 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AL080243.2-201ENST00000418783 582 ntBASIC18.45■□□□□ 0.54
CTDNEP1O95476 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 SNHG9-202ENST00000564014 471 ntBASIC18.45■□□□□ 0.54
CTDNEP1O95476 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 AL035456.1-201ENST00000456064 1369 ntBASIC18.44■□□□□ 0.54
CTDNEP1O95476 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 PTK7-212ENST00000476760 902 ntTSL 2 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.44■□□□□ 0.54
CTDNEP1O95476 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CTDNEP1O95476 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 FO393414.2-201ENST00000405153 598 ntBASIC18.43■□□□□ 0.54
CTDNEP1O95476 MIR1233-2-201ENST00000408138 82 ntBASIC18.43■□□□□ 0.54
CTDNEP1O95476 MIR1233-1-201ENST00000408722 82 ntBASIC18.43■□□□□ 0.54
CTDNEP1O95476 RPL37AP1-201ENST00000412502 279 ntBASIC18.43■□□□□ 0.54
CTDNEP1O95476 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 SLBP-205ENST00000488267 987 ntTSL 2 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC18.43■□□□□ 0.54
CTDNEP1O95476 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CTDNEP1O95476 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.42■□□□□ 0.54
CTDNEP1O95476 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms