Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 AL645939.2-201ENST00000427340 991 ntBASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 AC004449.1-201ENST00000564240 433 ntBASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 RN7SL828P-201ENST00000607615 303 ntBASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 AL133215.2-201ENST00000609242 977 ntBASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
ATG4BQ9Y4P1 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 MTND6P24-201ENST00000440466 518 ntBASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 Z92544.3-201ENST00000624747 417 ntBASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 HLA-DQB2-231ENST00000435145 2026 ntBASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 KRT8P37-201ENST00000451609 1420 ntBASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
ATG4BQ9Y4P1 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 AL035456.1-201ENST00000456064 1369 ntBASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.14■□□□□ 0.01
ATG4BQ9Y4P1 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms