Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AC027307.2-201ENST00000591252 911 ntBASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 AC008267.7-201ENST00000624570 1194 ntBASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 FAM45BP-202ENST00000592932 1624 ntBASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
LIMA1Q9UHB6 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 CELP-203ENST00000624767 2414 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 CICP24-201ENST00000605464 2705 ntBASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMA1Q9UHB6 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 AC126365.1-201ENST00000578585 1514 ntBASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 FAM220BP-201ENST00000377689 816 ntBASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 AL135744.1-201ENST00000565098 629 ntBASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
LIMA1Q9UHB6 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.46■□□□□ 0.39
LIMA1Q9UHB6 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms