Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
MKS1Q9NXB0 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 EEF1DP4-201ENST00000446006 880 ntBASIC15.8■□□□□ 0.12
MKS1Q9NXB0 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 AC092910.1-201ENST00000482027 1129 ntBASIC15.8■□□□□ 0.12
MKS1Q9NXB0 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 MIR7706-201ENST00000613747 67 ntBASIC15.8■□□□□ 0.12
MKS1Q9NXB0 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 FGD5P1-202ENST00000614866 2498 ntBASIC15.8■□□□□ 0.12
MKS1Q9NXB0 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 AC007191.1-201ENST00000623179 2995 ntBASIC15.8■□□□□ 0.12
MKS1Q9NXB0 AC023024.2-201ENST00000623561 1993 ntBASIC15.8■□□□□ 0.12
MKS1Q9NXB0 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
MKS1Q9NXB0 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 LINC00528-201ENST00000600723 2160 ntBASIC15.79■□□□□ 0.12
MKS1Q9NXB0 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AC098831.1-202ENST00000438821 336 ntBASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AL161645.1-201ENST00000622716 1255 ntBASIC15.79■□□□□ 0.12
MKS1Q9NXB0 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
MKS1Q9NXB0 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 ZBED1P1-201ENST00000502364 1930 ntBASIC15.78■□□□□ 0.12
MKS1Q9NXB0 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.78■□□□□ 0.12
MKS1Q9NXB0 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms