Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP28Q96RU2 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC18.3■□□□□ 0.52
USP28Q96RU2 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC18.3■□□□□ 0.52
USP28Q96RU2 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC18.3■□□□□ 0.52
USP28Q96RU2 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
USP28Q96RU2 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.3■□□□□ 0.52
USP28Q96RU2 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
USP28Q96RU2 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
USP28Q96RU2 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.3■□□□□ 0.52
USP28Q96RU2 SPDYE11-202ENST00000450699 704 ntBASIC18.3■□□□□ 0.52
USP28Q96RU2 RN7SL589P-201ENST00000481268 310 ntBASIC18.3■□□□□ 0.52
USP28Q96RU2 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18.3■□□□□ 0.52
USP28Q96RU2 SPDYE9P-201ENST00000570642 692 ntBASIC18.3■□□□□ 0.52
USP28Q96RU2 SPDYE10P-202ENST00000612005 668 ntBASIC18.3■□□□□ 0.52
USP28Q96RU2 SPDYE8P-202ENST00000612377 668 ntBASIC18.3■□□□□ 0.52
USP28Q96RU2 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
USP28Q96RU2 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP28Q96RU2 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
USP28Q96RU2 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC18.29■□□□□ 0.52
USP28Q96RU2 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.29■□□□□ 0.52
USP28Q96RU2 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC18.29■□□□□ 0.52
USP28Q96RU2 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.29■□□□□ 0.52
USP28Q96RU2 YBX2P1-201ENST00000394192 760 ntBASIC18.29■□□□□ 0.52
USP28Q96RU2 AC004987.2-201ENST00000395959 1148 ntBASIC18.29■□□□□ 0.52
USP28Q96RU2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.29■□□□□ 0.52
USP28Q96RU2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.29■□□□□ 0.52
USP28Q96RU2 AC040169.1-201ENST00000565382 521 ntBASIC18.29■□□□□ 0.52
USP28Q96RU2 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.29■□□□□ 0.52
USP28Q96RU2 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.29■□□□□ 0.52
USP28Q96RU2 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
USP28Q96RU2 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.29■□□□□ 0.52
USP28Q96RU2 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP28Q96RU2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 AC006058.4-201ENST00000624016 1670 ntBASIC18.28■□□□□ 0.52
USP28Q96RU2 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USP28Q96RU2 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC18.28■□□□□ 0.52
USP28Q96RU2 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP28Q96RU2 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
USP28Q96RU2 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.28■□□□□ 0.52
USP28Q96RU2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.28■□□□□ 0.52
USP28Q96RU2 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.28■□□□□ 0.52
USP28Q96RU2 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.28■□□□□ 0.52
USP28Q96RU2 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 POLD2P1-201ENST00000511220 997 ntBASIC18.28■□□□□ 0.52
USP28Q96RU2 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.28■□□□□ 0.52
USP28Q96RU2 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.28■□□□□ 0.52
USP28Q96RU2 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC18.28■□□□□ 0.52
USP28Q96RU2 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.28■□□□□ 0.52
USP28Q96RU2 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC18.28■□□□□ 0.52
USP28Q96RU2 C18orf15-201ENST00000623680 2534 ntBASIC18.28■□□□□ 0.52
USP28Q96RU2 CYP4F24P-201ENST00000586049 1580 ntBASIC18.28■□□□□ 0.52
USP28Q96RU2 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC18.28■□□□□ 0.52
USP28Q96RU2 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms