Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 AL390754.1-201ENST00000619088 582 ntBASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.27■□□□□ 0.19
SHROOM3Q8TF72 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AC136621.1-201ENST00000624017 2304 ntBASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AC013268.4-201ENST00000637413 2228 ntBASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AC105250.1-201ENST00000509378 2057 ntBASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 TREML5P-201ENST00000421694 576 ntBASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
SHROOM3Q8TF72 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SHROOM3Q8TF72 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms