Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.53■□□□□ 0.08
LMX1AQ8TE12 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 FLJ16779-201ENST00000612722 7638 ntBASIC15.52■□□□□ 0.08
LMX1AQ8TE12 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC234783.1-201ENST00000441761 496 ntBASIC15.52■□□□□ 0.08
LMX1AQ8TE12 PHKG1P2-201ENST00000457537 863 ntBASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC008735.3-201ENST00000596646 500 ntBASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC010319.3-201ENST00000597028 470 ntBASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AC133539.2-201ENST00000604757 467 ntBASIC15.52■□□□□ 0.08
LMX1AQ8TE12 AL512343.1-201ENST00000605837 169 ntBASIC15.52■□□□□ 0.08
LMX1AQ8TE12 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.52■□□□□ 0.08
LMX1AQ8TE12 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.07
LMX1AQ8TE12 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 REXO1L1P-202ENST00000608646 1974 ntBASIC15.51■□□□□ 0.07
LMX1AQ8TE12 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.51■□□□□ 0.07
LMX1AQ8TE12 AGGF1P2-201ENST00000426656 2106 ntBASIC15.51■□□□□ 0.07
LMX1AQ8TE12 KRT18P64-201ENST00000434946 1219 ntBASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms