Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 AP002472.1-201ENST00000577490 586 ntBASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 SSR4P1-203ENST00000599569 2260 ntBASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CLHC1Q8NHS4 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 MIR4321-201ENST00000592276 80 ntBASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 AC099522.2-201ENST00000607001 744 ntBASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 AL161645.1-201ENST00000622716 1255 ntBASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CLHC1Q8NHS4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AC092127.1-201ENST00000567093 3455 ntBASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.41■□□□□ 0.06
CLHC1Q8NHS4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms