Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AC104581.4-201ENST00000623126 3052 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ZDHHC7-201ENST00000313732 3442 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AGK-211ENST00000629555 2765 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 MIR1909-201ENST00000411312 80 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PIN1P1-201ENST00000412108 996 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 IGHV3-42-201ENST00000520410 361 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 MPI-209ENST00000564003 1195 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AL132655.2-201ENST00000596276 594 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 MIR34AHG-203ENST00000635687 4211 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FTH1-202ENST00000526640 786 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SLC9A3P2-201ENST00000447821 2021 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SPDYE19P-201ENST00000338590 713 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RN7SL618P-201ENST00000477850 296 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 GRIN1-205ENST00000371555 4003 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 SPDYE12P-201ENST00000618416 771 ntBASIC4.99□□□□□ -1.61
SYNE1Q8NF91 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
SYNE1Q8NF91 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms