Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL28A1Q2UY09 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL28A1Q2UY09 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
COL28A1Q2UY09 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.43■□□□□ 0.06
COL28A1Q2UY09 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AC005229.1-201ENST00000392885 409 ntBASIC15.42■□□□□ 0.06
COL28A1Q2UY09 MIR1247-201ENST00000408206 136 ntBASIC15.42■□□□□ 0.06
COL28A1Q2UY09 KLF2P4-201ENST00000451959 1225 ntBASIC15.42■□□□□ 0.06
COL28A1Q2UY09 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AC073389.1-201ENST00000595595 795 ntBASIC15.42■□□□□ 0.06
COL28A1Q2UY09 BTNL10-201ENST00000595971 695 ntBASIC15.42■□□□□ 0.06
COL28A1Q2UY09 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 AC106886.4-201ENST00000623557 2502 ntBASIC15.42■□□□□ 0.06
COL28A1Q2UY09 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.42■□□□□ 0.06
COL28A1Q2UY09 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 PCDHA14-201ENST00000506751 2298 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 GPAA1P2-201ENST00000417923 928 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC098850.1-201ENST00000419919 790 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 MEP1AP4-201ENST00000423244 1087 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 PFN1P12-201ENST00000455938 534 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AP002490.2-201ENST00000524791 560 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC023310.3-201ENST00000557027 670 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC100756.1-201ENST00000562736 682 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC138749.3-201ENST00000567691 622 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC105021.1-202ENST00000570572 669 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 SRD5A3P1-201ENST00000603021 949 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 AC116165.1-201ENST00000611806 668 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL28A1Q2UY09 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.41■□□□□ 0.06
COL28A1Q2UY09 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms