Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 MTHFR-217ENST00000641820 1569 ntBASIC15.14■□□□□ 0.01
RFX3P48380 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RFX3P48380 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.14■□□□□ 0.01
RFX3P48380 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
RFX3P48380 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 UXT-AS1-201ENST00000590504 1525 ntBASIC15.13■□□□□ 0.01
RFX3P48380 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
RFX3P48380 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.13■□□□□ 0.01
RFX3P48380 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 RN7SL589P-201ENST00000481268 310 ntBASIC15.13■□□□□ 0.01
RFX3P48380 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.13■□□□□ 0.01
RFX3P48380 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 KRT8P48-201ENST00000515599 1220 ntBASIC15.13■□□□□ 0.01
RFX3P48380 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.13■□□□□ 0.01
RFX3P48380 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 AC027307.2-201ENST00000591252 911 ntBASIC15.13■□□□□ 0.01
RFX3P48380 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
RFX3P48380 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.13■□□□□ 0.01
RFX3P48380 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
RFX3P48380 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 AKAP8P1-201ENST00000434743 1349 ntBASIC15.13■□□□□ 0.01
RFX3P48380 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RFX3P48380 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.12■□□□□ 0.01
RFX3P48380 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.12■□□□□ 0.01
RFX3P48380 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RFX3P48380 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 ELL2P1-201ENST00000413990 1906 ntBASIC15.12■□□□□ 0.01
RFX3P48380 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.12■□□□□ 0.01
RFX3P48380 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.12■□□□□ 0.01
RFX3P48380 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 GPX1P2-201ENST00000429271 606 ntBASIC15.12■□□□□ 0.01
RFX3P48380 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.12■□□□□ 0.01
RFX3P48380 AC079140.1-201ENST00000508039 487 ntBASIC15.12■□□□□ 0.01
RFX3P48380 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.12■□□□□ 0.01
RFX3P48380 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.12■□□□□ 0.01
RFX3P48380 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.12■□□□□ 0.01
RFX3P48380 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.12■□□□□ 0.01
RFX3P48380 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RFX3P48380 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms