Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CDX1P47902 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 ACTL9-202ENST00000612068 1252 ntBASIC13.17□□□□□ -0.3
CDX1P47902 AL513190.1-201ENST00000621254 727 ntBASIC13.17□□□□□ -0.3
CDX1P47902 AL645728.2-201ENST00000641974 660 ntBASIC13.17□□□□□ -0.3
CDX1P47902 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CDX1P47902 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC13.17□□□□□ -0.3
CDX1P47902 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.17□□□□□ -0.3
CDX1P47902 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CDX1P47902 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
CDX1P47902 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC13.16□□□□□ -0.3
CDX1P47902 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC13.16□□□□□ -0.3
CDX1P47902 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.16□□□□□ -0.3
CDX1P47902 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC13.16□□□□□ -0.3
CDX1P47902 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC13.16□□□□□ -0.3
CDX1P47902 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 AC005412.3-201ENST00000580309 715 ntBASIC13.16□□□□□ -0.3
CDX1P47902 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.16□□□□□ -0.3
CDX1P47902 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC13.16□□□□□ -0.3
CDX1P47902 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.16□□□□□ -0.3
CDX1P47902 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CDX1P47902 CYP51A1P2-201ENST00000419457 1499 ntBASIC13.16□□□□□ -0.3
CDX1P47902 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 AC006538.1-201ENST00000567905 1585 ntBASIC13.15□□□□□ -0.3
CDX1P47902 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 AC106881.1-201ENST00000605849 3329 ntBASIC13.15□□□□□ -0.3
CDX1P47902 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.15□□□□□ -0.3
CDX1P47902 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 AC005840.4-201ENST00000541242 2494 ntBASIC13.15□□□□□ -0.3
CDX1P47902 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CDX1P47902 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.15□□□□□ -0.3
CDX1P47902 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms