Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.71□□□□□ -0.05
RFC3P40938 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.71□□□□□ -0.05
RFC3P40938 PIN1P1-201ENST00000412108 996 ntBASIC14.71□□□□□ -0.05
RFC3P40938 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.71□□□□□ -0.05
RFC3P40938 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.71□□□□□ -0.05
RFC3P40938 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 AC010336.2-201ENST00000564226 506 ntBASIC14.71□□□□□ -0.05
RFC3P40938 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.71□□□□□ -0.05
RFC3P40938 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.71□□□□□ -0.05
RFC3P40938 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.71□□□□□ -0.05
RFC3P40938 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.71□□□□□ -0.05
RFC3P40938 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.71□□□□□ -0.05
RFC3P40938 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.71□□□□□ -0.05
RFC3P40938 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.71□□□□□ -0.05
RFC3P40938 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.71□□□□□ -0.05
RFC3P40938 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
RFC3P40938 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.71□□□□□ -0.05
RFC3P40938 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.71□□□□□ -0.05
RFC3P40938 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
RFC3P40938 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.71□□□□□ -0.05
RFC3P40938 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.71□□□□□ -0.05
RFC3P40938 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
RFC3P40938 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.06
RFC3P40938 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.71□□□□□ -0.06
RFC3P40938 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC14.71□□□□□ -0.06
RFC3P40938 AGGF1P2-201ENST00000426656 2106 ntBASIC14.71□□□□□ -0.06
RFC3P40938 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.71□□□□□ -0.06
RFC3P40938 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFC3P40938 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
RFC3P40938 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
RFC3P40938 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
RFC3P40938 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
RFC3P40938 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 AL136982.4-201ENST00000437689 1740 ntBASIC14.7□□□□□ -0.06
RFC3P40938 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
RFC3P40938 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
RFC3P40938 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 SPDYE18-201ENST00000510091 1050 ntBASIC14.7□□□□□ -0.06
RFC3P40938 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.7□□□□□ -0.06
RFC3P40938 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.7□□□□□ -0.06
RFC3P40938 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 AL662799.1-202ENST00000614205 422 ntBASIC14.7□□□□□ -0.06
RFC3P40938 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.7□□□□□ -0.06
RFC3P40938 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
RFC3P40938 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.7□□□□□ -0.06
RFC3P40938 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.7□□□□□ -0.06
RFC3P40938 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.7□□□□□ -0.06
RFC3P40938 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
RFC3P40938 AC007541.1-201ENST00000570282 1469 ntBASIC14.69□□□□□ -0.06
RFC3P40938 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.69□□□□□ -0.06
RFC3P40938 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
RFC3P40938 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC14.69□□□□□ -0.06
RFC3P40938 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.69□□□□□ -0.06
RFC3P40938 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC14.69□□□□□ -0.06
RFC3P40938 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
RFC3P40938 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
RFC3P40938 TCAF2P1-201ENST00000291129 2421 ntBASIC14.69□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms