Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 AGGF1P2-201ENST00000426656 2106 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 FAM8A4P-201ENST00000435433 1213 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC20.62■□□□□ 0.89
COL18A1P39060 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC20.62■□□□□ 0.89
COL18A1P39060 AC126915.1-201ENST00000522847 1038 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC20.62■□□□□ 0.89
COL18A1P39060 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC20.62■□□□□ 0.89
COL18A1P39060 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC20.62■□□□□ 0.89
COL18A1P39060 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC20.62■□□□□ 0.89
COL18A1P39060 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC20.62■□□□□ 0.89
COL18A1P39060 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL18A1P39060 AC025181.2-201ENST00000606994 802 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 AP001505.2-201ENST00000616815 443 ntBASIC20.62■□□□□ 0.89
COL18A1P39060 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC20.61■□□□□ 0.89
COL18A1P39060 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC20.61■□□□□ 0.89
COL18A1P39060 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 GGCT-203ENST00000409144 836 ntTSL 2 BASIC20.61■□□□□ 0.89
COL18A1P39060 NUS1P3-201ENST00000423502 862 ntBASIC20.61■□□□□ 0.89
COL18A1P39060 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COL18A1P39060 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC20.61■□□□□ 0.89
COL18A1P39060 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC20.61■□□□□ 0.89
COL18A1P39060 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC20.61■□□□□ 0.89
COL18A1P39060 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COL18A1P39060 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
COL18A1P39060 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
COL18A1P39060 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.61■□□□□ 0.89
COL18A1P39060 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL18A1P39060 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC20.6■□□□□ 0.89
COL18A1P39060 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 KRTAP19-9P-201ENST00000421795 191 ntBASIC20.6■□□□□ 0.89
COL18A1P39060 SPTLC1P5-201ENST00000450718 252 ntBASIC20.6■□□□□ 0.89
COL18A1P39060 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.6■□□□□ 0.89
COL18A1P39060 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC20.6■□□□□ 0.89
COL18A1P39060 MIR4783-201ENST00000580343 82 ntBASIC20.6■□□□□ 0.89
COL18A1P39060 TBCB-211ENST00000589996 724 ntTSL 3 BASIC20.6■□□□□ 0.89
COL18A1P39060 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC20.6■□□□□ 0.89
COL18A1P39060 AC244452.3-201ENST00000636814 210 ntBASIC20.6■□□□□ 0.89
COL18A1P39060 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
COL18A1P39060 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
COL18A1P39060 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC20.6■□□□□ 0.89
COL18A1P39060 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC20.6■□□□□ 0.89
COL18A1P39060 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.6■□□□□ 0.89
COL18A1P39060 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC20.6■□□□□ 0.89
COL18A1P39060 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL18A1P39060 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
COL18A1P39060 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.59■□□□□ 0.89
COL18A1P39060 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 NCK2-206ENST00000522586 490 ntTSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL18A1P39060 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC20.59■□□□□ 0.89
COL18A1P39060 HCG18-245ENST00000602550 559 ntTSL 4 BASIC20.59■□□□□ 0.89
COL18A1P39060 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL18A1P39060 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL18A1P39060 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL18A1P39060 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms