Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 AL513477.1-201ENST00000602865 2407 ntBASIC16.85■□□□□ 0.29
BDNFP23560 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
BDNFP23560 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.85■□□□□ 0.29
BDNFP23560 AC018892.3-201ENST00000623986 2499 ntBASIC16.85■□□□□ 0.29
BDNFP23560 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
BDNFP23560 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.84■□□□□ 0.29
BDNFP23560 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.84■□□□□ 0.29
BDNFP23560 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.84■□□□□ 0.29
BDNFP23560 PHKG1P2-201ENST00000457537 863 ntBASIC16.84■□□□□ 0.29
BDNFP23560 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.84■□□□□ 0.29
BDNFP23560 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.84■□□□□ 0.29
BDNFP23560 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.84■□□□□ 0.29
BDNFP23560 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.84■□□□□ 0.29
BDNFP23560 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
BDNFP23560 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 AL662799.1-202ENST00000614205 422 ntBASIC16.84■□□□□ 0.29
BDNFP23560 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.84■□□□□ 0.29
BDNFP23560 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 Z97205.2-201ENST00000564697 1639 ntBASIC16.84■□□□□ 0.29
BDNFP23560 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.84■□□□□ 0.29
BDNFP23560 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
BDNFP23560 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
BDNFP23560 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.84■□□□□ 0.29
BDNFP23560 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
BDNFP23560 LINC02199-201ENST00000506655 2702 ntBASIC16.83■□□□□ 0.29
BDNFP23560 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
BDNFP23560 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
BDNFP23560 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
BDNFP23560 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.28
BDNFP23560 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.83■□□□□ 0.28
BDNFP23560 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.83■□□□□ 0.28
BDNFP23560 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.83■□□□□ 0.28
BDNFP23560 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
BDNFP23560 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.83■□□□□ 0.28
BDNFP23560 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 SPDYE22P-201ENST00000582158 798 ntBASIC16.83■□□□□ 0.28
BDNFP23560 AL450472.2-201ENST00000603663 1156 ntBASIC16.83■□□□□ 0.28
BDNFP23560 LINC01115-203ENST00000606068 577 ntBASIC16.83■□□□□ 0.28
BDNFP23560 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.83■□□□□ 0.28
BDNFP23560 AF228730.6-201ENST00000641497 218 ntBASIC16.83■□□□□ 0.28
BDNFP23560 AC084121.3-201ENST00000641716 218 ntBASIC16.83■□□□□ 0.28
BDNFP23560 AC105233.6-201ENST00000642093 218 ntBASIC16.83■□□□□ 0.28
BDNFP23560 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
BDNFP23560 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.83■□□□□ 0.28
BDNFP23560 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.82■□□□□ 0.28
BDNFP23560 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.82■□□□□ 0.28
BDNFP23560 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
BDNFP23560 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BDNFP23560 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms