Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
PCNAP12004 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.68■□□□□ 0.1
PCNAP12004 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCNAP12004 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCNAP12004 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
PCNAP12004 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.68■□□□□ 0.1
PCNAP12004 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.68■□□□□ 0.1
PCNAP12004 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.68■□□□□ 0.1
PCNAP12004 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCNAP12004 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.68■□□□□ 0.1
PCNAP12004 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PCNAP12004 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
PCNAP12004 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
PCNAP12004 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PCNAP12004 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
PCNAP12004 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
PCNAP12004 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.67■□□□□ 0.1
PCNAP12004 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.67■□□□□ 0.1
PCNAP12004 YBX2P1-201ENST00000394192 760 ntBASIC15.67■□□□□ 0.1
PCNAP12004 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 AP000347.1-202ENST00000435868 847 ntBASIC15.67■□□□□ 0.1
PCNAP12004 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.67■□□□□ 0.1
PCNAP12004 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.67■□□□□ 0.1
PCNAP12004 AC092902.6-201ENST00000641783 218 ntBASIC15.67■□□□□ 0.1
PCNAP12004 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
PCNAP12004 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PCNAP12004 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PCNAP12004 AL589702.1-201ENST00000641229 1509 ntBASIC15.67■□□□□ 0.1
PCNAP12004 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 LINC02447-202ENST00000501888 2146 ntBASIC15.67■□□□□ 0.1
PCNAP12004 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.67■□□□□ 0.1
PCNAP12004 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
PCNAP12004 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCNAP12004 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.66■□□□□ 0.1
PCNAP12004 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 CDC14C-201ENST00000428251 1719 ntBASIC15.66■□□□□ 0.1
PCNAP12004 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.66■□□□□ 0.1
PCNAP12004 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.66■□□□□ 0.1
PCNAP12004 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PCNAP12004 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC15.66■□□□□ 0.1
PCNAP12004 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
PCNAP12004 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.66■□□□□ 0.1
PCNAP12004 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
PCNAP12004 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 MCCD1P2-201ENST00000423228 335 ntBASIC15.66■□□□□ 0.1
PCNAP12004 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.66■□□□□ 0.1
PCNAP12004 SPDYE11-202ENST00000450699 704 ntBASIC15.66■□□□□ 0.1
PCNAP12004 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.66■□□□□ 0.1
PCNAP12004 SPDYE9P-201ENST00000570642 692 ntBASIC15.66■□□□□ 0.1
PCNAP12004 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.66■□□□□ 0.1
PCNAP12004 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 SPDYE10P-202ENST00000612005 668 ntBASIC15.66■□□□□ 0.1
PCNAP12004 SPDYE8P-202ENST00000612377 668 ntBASIC15.66■□□□□ 0.1
PCNAP12004 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCNAP12004 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms