Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 WT1-209ENST00000530998 2421 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A1P02462 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A1P02462 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A1P02462 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A1P02462 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A1P02462 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
COL4A1P02462 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A1P02462 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 ACTBP8-201ENST00000403258 1108 ntBASIC19.19■□□□□ 0.66
COL4A1P02462 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.19■□□□□ 0.66
COL4A1P02462 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A1P02462 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A1P02462 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A1P02462 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.19■□□□□ 0.66
COL4A1P02462 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.19■□□□□ 0.66
COL4A1P02462 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL4A1P02462 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A1P02462 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.18■□□□□ 0.66
COL4A1P02462 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC19.18■□□□□ 0.66
COL4A1P02462 YBX1P6-201ENST00000442962 1002 ntBASIC19.18■□□□□ 0.66
COL4A1P02462 LINC02447-202ENST00000501888 2146 ntBASIC19.18■□□□□ 0.66
COL4A1P02462 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC19.18■□□□□ 0.66
COL4A1P02462 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC19.18■□□□□ 0.66
COL4A1P02462 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL4A1P02462 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A1P02462 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 TKT-202ENST00000423516 2075 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A1P02462 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A1P02462 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL4A1P02462 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.18■□□□□ 0.66
COL4A1P02462 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.18■□□□□ 0.66
COL4A1P02462 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL4A1P02462 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.17■□□□□ 0.66
COL4A1P02462 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 LARP4-220ENST00000615080 856 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 AL139099.5-201ENST00000635274 300 ntBASIC19.17■□□□□ 0.66
COL4A1P02462 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 AC018735.1-201ENST00000437208 1502 ntBASIC19.17■□□□□ 0.66
COL4A1P02462 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 APOC3-202ENST00000375345 604 ntTSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
COL4A1P02462 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC19.17■□□□□ 0.66
COL4A1P02462 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL4A1P02462 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.17■□□□□ 0.66
COL4A1P02462 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
COL4A1P02462 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms