Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 AC006486.2-201ENST00000624246 2199 ntBASIC18.47■□□□□ 0.55
CTDNEP1O95476 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 KRT8P12-202ENST00000472924 1397 ntBASIC18.47■□□□□ 0.55
CTDNEP1O95476 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 AC138035.3-201ENST00000622706 2791 ntBASIC18.47■□□□□ 0.55
CTDNEP1O95476 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.47■□□□□ 0.55
CTDNEP1O95476 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 LINC00628-201ENST00000628516 1289 ntBASIC18.47■□□□□ 0.55
CTDNEP1O95476 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
CTDNEP1O95476 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CTDNEP1O95476 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 MTND6P24-201ENST00000440466 518 ntBASIC18.46■□□□□ 0.55
CTDNEP1O95476 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 AC069262.1-201ENST00000539058 672 ntBASIC18.46■□□□□ 0.55
CTDNEP1O95476 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 AL079307.3-201ENST00000556114 283 ntBASIC18.46■□□□□ 0.55
CTDNEP1O95476 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 AC103702.1-201ENST00000548801 2630 ntBASIC18.46■□□□□ 0.55
CTDNEP1O95476 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CTDNEP1O95476 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CTDNEP1O95476 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
CTDNEP1O95476 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.46■□□□□ 0.54
CTDNEP1O95476 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.45■□□□□ 0.54
CTDNEP1O95476 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CTDNEP1O95476 C18orf15-201ENST00000623680 2534 ntBASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms