Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 AC104640.1-201ENST00000562617 2109 ntBASIC15.41■□□□□ 0.06
SEMA3DO95025 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.41■□□□□ 0.06
SEMA3DO95025 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SEMA3DO95025 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SEMA3DO95025 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.4■□□□□ 0.06
SEMA3DO95025 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC15.4■□□□□ 0.06
SEMA3DO95025 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC15.4■□□□□ 0.06
SEMA3DO95025 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.4■□□□□ 0.06
SEMA3DO95025 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC15.4■□□□□ 0.06
SEMA3DO95025 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
SEMA3DO95025 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.4■□□□□ 0.06
SEMA3DO95025 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.4■□□□□ 0.06
SEMA3DO95025 BX842568.4-201ENST00000421222 227 ntBASIC15.4■□□□□ 0.06
SEMA3DO95025 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.4■□□□□ 0.06
SEMA3DO95025 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.4■□□□□ 0.06
SEMA3DO95025 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC15.4■□□□□ 0.06
SEMA3DO95025 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.4■□□□□ 0.06
SEMA3DO95025 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.4■□□□□ 0.06
SEMA3DO95025 AC243562.2-201ENST00000561247 970 ntBASIC15.4■□□□□ 0.06
SEMA3DO95025 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 AC022145.2-201ENST00000598203 171 ntBASIC15.4■□□□□ 0.06
SEMA3DO95025 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.4■□□□□ 0.06
SEMA3DO95025 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.4■□□□□ 0.06
SEMA3DO95025 AL513210.1-201ENST00000629608 234 ntBASIC15.4■□□□□ 0.06
SEMA3DO95025 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
SEMA3DO95025 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SEMA3DO95025 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SEMA3DO95025 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
SEMA3DO95025 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
SEMA3DO95025 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.39■□□□□ 0.05
SEMA3DO95025 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.39■□□□□ 0.05
SEMA3DO95025 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.39■□□□□ 0.05
SEMA3DO95025 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.39■□□□□ 0.05
SEMA3DO95025 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.39■□□□□ 0.05
SEMA3DO95025 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.39■□□□□ 0.05
SEMA3DO95025 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.39■□□□□ 0.05
SEMA3DO95025 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.39■□□□□ 0.05
SEMA3DO95025 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 MIR3687-2-201ENST00000577708 61 ntBASIC15.39■□□□□ 0.05
SEMA3DO95025 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.39■□□□□ 0.05
SEMA3DO95025 MIR3687-1-201ENST00000614492 61 ntBASIC15.39■□□□□ 0.05
SEMA3DO95025 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.39■□□□□ 0.05
SEMA3DO95025 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.39■□□□□ 0.05
SEMA3DO95025 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
SEMA3DO95025 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
SEMA3DO95025 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SEMA3DO95025 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SEMA3DO95025 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
SEMA3DO95025 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms