Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
NPHP4O75161 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
NPHP4O75161 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 NPPA-201ENST00000376476 728 ntTSL 3 BASIC22.01■■□□□ 1.11
NPHP4O75161 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC22.01■■□□□ 1.11
NPHP4O75161 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC22.01■■□□□ 1.11
NPHP4O75161 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC22.01■■□□□ 1.11
NPHP4O75161 BNIP3P13-201ENST00000599968 566 ntBASIC22.01■■□□□ 1.11
NPHP4O75161 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC22.01■■□□□ 1.11
NPHP4O75161 GPR39-203ENST00000622084 900 ntTSL 5 BASIC22.01■■□□□ 1.11
NPHP4O75161 PRSS30P-206ENST00000641773 873 ntBASIC22.01■■□□□ 1.11
NPHP4O75161 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC22.01■■□□□ 1.11
NPHP4O75161 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
NPHP4O75161 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NPHP4O75161 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 AC026316.1-201ENST00000398900 414 ntBASIC22■■□□□ 1.11
NPHP4O75161 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC22■■□□□ 1.11
NPHP4O75161 MARK2P5-201ENST00000507649 634 ntBASIC22■■□□□ 1.11
NPHP4O75161 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC22■■□□□ 1.11
NPHP4O75161 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC22■■□□□ 1.11
NPHP4O75161 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC22■■□□□ 1.11
NPHP4O75161 EID1-202ENST00000560490 584 ntTSL 3 BASIC22■■□□□ 1.11
NPHP4O75161 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC22■■□□□ 1.11
NPHP4O75161 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 CD276-203ENST00000537340 2439 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NPHP4O75161 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC22■■□□□ 1.11
NPHP4O75161 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 AL390961.4-201ENST00000623958 2535 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
NPHP4O75161 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC21.99■■□□□ 1.11
NPHP4O75161 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
NPHP4O75161 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 AC125604.1-201ENST00000496255 707 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 AL391280.1-201ENST00000506969 1062 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC21.99■■□□□ 1.11
NPHP4O75161 AC025181.2-201ENST00000606994 802 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 AC006453.1-201ENST00000636037 1257 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC21.99■■□□□ 1.11
NPHP4O75161 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
NPHP4O75161 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.99■■□□□ 1.11
NPHP4O75161 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
NPHP4O75161 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC21.99■■□□□ 1.11
NPHP4O75161 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 KRT8P4-201ENST00000509735 1454 ntBASIC21.99■■□□□ 1.11
NPHP4O75161 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.99■■□□□ 1.11
NPHP4O75161 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NPHP4O75161 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.99■■□□□ 1.11
NPHP4O75161 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP4O75161 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC21.98■■□□□ 1.11
NPHP4O75161 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP4O75161 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP4O75161 POM121L8P-201ENST00000417732 1281 ntBASIC21.98■■□□□ 1.11
NPHP4O75161 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
NPHP4O75161 PFN2-202ENST00000423691 911 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP4O75161 POM121L9P-203ENST00000441984 1285 ntBASIC21.98■■□□□ 1.11
NPHP4O75161 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC21.98■■□□□ 1.11
NPHP4O75161 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC21.98■■□□□ 1.11
NPHP4O75161 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NPHP4O75161 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC21.98■■□□□ 1.11
NPHP4O75161 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
NPHP4O75161 AC103691.2-201ENST00000618824 433 ntBASIC21.98■■□□□ 1.11
NPHP4O75161 YRDCP1-201ENST00000621419 643 ntBASIC21.98■■□□□ 1.11
NPHP4O75161 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
NPHP4O75161 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
NPHP4O75161 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC21.98■■□□□ 1.11
NPHP4O75161 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms