Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CACNA1FO60840 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CACNA1FO60840 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
CACNA1FO60840 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
CACNA1FO60840 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CACNA1FO60840 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC19.81■□□□□ 0.76
CACNA1FO60840 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
CACNA1FO60840 GAPDHP40-201ENST00000505218 1006 ntBASIC19.81■□□□□ 0.76
CACNA1FO60840 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
CACNA1FO60840 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC19.81■□□□□ 0.76
CACNA1FO60840 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC19.81■□□□□ 0.76
CACNA1FO60840 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.81■□□□□ 0.76
CACNA1FO60840 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CACNA1FO60840 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
CACNA1FO60840 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC19.8■□□□□ 0.76
CACNA1FO60840 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CACNA1FO60840 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.8■□□□□ 0.76
CACNA1FO60840 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC19.8■□□□□ 0.76
CACNA1FO60840 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC19.8■□□□□ 0.76
CACNA1FO60840 AC098614.1-201ENST00000368528 745 ntBASIC19.8■□□□□ 0.76
CACNA1FO60840 GAPDHP21-201ENST00000450301 1010 ntBASIC19.8■□□□□ 0.76
CACNA1FO60840 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC19.8■□□□□ 0.76
CACNA1FO60840 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.8■□□□□ 0.76
CACNA1FO60840 AC133539.2-201ENST00000604757 467 ntBASIC19.8■□□□□ 0.76
CACNA1FO60840 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.8■□□□□ 0.76
CACNA1FO60840 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC19.8■□□□□ 0.76
CACNA1FO60840 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CACNA1FO60840 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CACNA1FO60840 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.8■□□□□ 0.76
CACNA1FO60840 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CACNA1FO60840 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 AC007541.1-201ENST00000570282 1469 ntBASIC19.79■□□□□ 0.76
CACNA1FO60840 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC19.79■□□□□ 0.76
CACNA1FO60840 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC19.79■□□□□ 0.76
CACNA1FO60840 PTPA-220ENST00000436883 532 ntTSL 4 BASIC19.79■□□□□ 0.76
CACNA1FO60840 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC19.79■□□□□ 0.76
CACNA1FO60840 TAF8-206ENST00000472818 719 ntTSL 2 BASIC19.79■□□□□ 0.76
CACNA1FO60840 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC19.79■□□□□ 0.76
CACNA1FO60840 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.79■□□□□ 0.76
CACNA1FO60840 CR383656.12-201ENST00000549567 513 ntBASIC19.79■□□□□ 0.76
CACNA1FO60840 SAMD11P1-201ENST00000571429 661 ntBASIC19.79■□□□□ 0.76
CACNA1FO60840 AC015936.2-201ENST00000593177 259 ntBASIC19.79■□□□□ 0.76
CACNA1FO60840 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
CACNA1FO60840 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CACNA1FO60840 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.79■□□□□ 0.76
CACNA1FO60840 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
CACNA1FO60840 AC004066.1-201ENST00000502488 802 ntBASIC19.79■□□□□ 0.76
CACNA1FO60840 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 MIR5189-201ENST00000577370 114 ntBASIC19.79■□□□□ 0.76
CACNA1FO60840 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC19.79■□□□□ 0.76
CACNA1FO60840 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CACNA1FO60840 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC19.79■□□□□ 0.76
CACNA1FO60840 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
CACNA1FO60840 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CACNA1FO60840 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CACNA1FO60840 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.78■□□□□ 0.76
CACNA1FO60840 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.78■□□□□ 0.76
CACNA1FO60840 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CACNA1FO60840 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC19.78■□□□□ 0.76
CACNA1FO60840 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CACNA1FO60840 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC19.78■□□□□ 0.76
CACNA1FO60840 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.78■□□□□ 0.76
CACNA1FO60840 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC19.78■□□□□ 0.76
CACNA1FO60840 AC005252.2-201ENST00000624630 1141 ntBASIC19.78■□□□□ 0.76
CACNA1FO60840 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC19.78■□□□□ 0.76
CACNA1FO60840 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CACNA1FO60840 AGER-206ENST00000375070 1463 ntTSL 5 BASIC19.78■□□□□ 0.76
CACNA1FO60840 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms