Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
CHMP1AQ9HD42 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 AC129492.6-201ENST00000611383 1305 ntBASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 ST20-AS1-201ENST00000560255 4223 ntBASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 RAPGEF1-201ENST00000372189 6085 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SAPCD2P3-201ENST00000455031 850 ntBASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 AC025062.2-201ENST00000605477 670 ntBASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 REXO1L6P-202ENST00000619970 1078 ntBASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.18
CHMP1AQ9HD42 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.9□□□□□ -0.19
CHMP1AQ9HD42 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CHMP1AQ9HD42 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
CHMP1AQ9HD42 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
CHMP1AQ9HD42 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CHMP1AQ9HD42 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
CHMP1AQ9HD42 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.9□□□□□ -0.19
CHMP1AQ9HD42 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 AC023157.3-201ENST00000619086 2088 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 CICP4-201ENST00000447359 2812 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 AC073648.2-201ENST00000510116 352 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 OR7E14P-202ENST00000530490 1290 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 AC107918.2-201ENST00000530817 355 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 AC021087.4-201ENST00000563761 564 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 PPT1-215ENST00000641471 2368 ntBASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CHMP1AQ9HD42 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms