Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SKA3Q8IX90 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
SKA3Q8IX90 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 FAM220BP-201ENST00000377689 816 ntBASIC14.25□□□□□ -0.13
SKA3Q8IX90 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 RNA5SP410-201ENST00000516285 106 ntBASIC14.25□□□□□ -0.13
SKA3Q8IX90 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 AC024267.1-201ENST00000582320 895 ntBASIC14.25□□□□□ -0.13
SKA3Q8IX90 MIR4321-201ENST00000592276 80 ntBASIC14.25□□□□□ -0.13
SKA3Q8IX90 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 AP3S2-216ENST00000617003 1561 ntBASIC14.25□□□□□ -0.13
SKA3Q8IX90 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.25□□□□□ -0.13
SKA3Q8IX90 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SKA3Q8IX90 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 HLA-H-201ENST00000383620 1096 ntBASIC14.24□□□□□ -0.13
SKA3Q8IX90 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 AC061975.2-201ENST00000581722 295 ntBASIC14.24□□□□□ -0.13
SKA3Q8IX90 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SKA3Q8IX90 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.24□□□□□ -0.13
SKA3Q8IX90 AC139530.3-201ENST00000620344 690 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms