Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.07□□□□□ -0.16
TFF3Q07654 MIR4321-201ENST00000592276 80 ntBASIC14.07□□□□□ -0.16
TFF3Q07654 AC010319.3-201ENST00000597028 470 ntBASIC14.07□□□□□ -0.16
TFF3Q07654 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC14.07□□□□□ -0.16
TFF3Q07654 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.07□□□□□ -0.16
TFF3Q07654 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.07□□□□□ -0.16
TFF3Q07654 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
TFF3Q07654 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.07□□□□□ -0.16
TFF3Q07654 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
TFF3Q07654 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
TFF3Q07654 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.07□□□□□ -0.16
TFF3Q07654 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.07□□□□□ -0.16
TFF3Q07654 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
TFF3Q07654 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 Z97205.2-201ENST00000564697 1639 ntBASIC14.06□□□□□ -0.16
TFF3Q07654 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.06□□□□□ -0.16
TFF3Q07654 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC14.06□□□□□ -0.16
TFF3Q07654 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 BTNL10-201ENST00000595971 695 ntBASIC14.06□□□□□ -0.16
TFF3Q07654 AL606495.2-201ENST00000605867 535 ntBASIC14.06□□□□□ -0.16
TFF3Q07654 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.06□□□□□ -0.16
TFF3Q07654 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
TFF3Q07654 U82695.1-201ENST00000635752 1889 ntBASIC14.06□□□□□ -0.16
TFF3Q07654 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
TFF3Q07654 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
TFF3Q07654 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 AC006538.1-201ENST00000567905 1585 ntBASIC14.05□□□□□ -0.16
TFF3Q07654 AC005915.1-201ENST00000624912 2018 ntBASIC14.05□□□□□ -0.16
TFF3Q07654 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 AC008741.2-201ENST00000612792 3115 ntBASIC14.05□□□□□ -0.16
TFF3Q07654 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
TFF3Q07654 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
TFF3Q07654 FAM86MP-201ENST00000340703 885 ntBASIC14.05□□□□□ -0.16
TFF3Q07654 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
TFF3Q07654 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
TFF3Q07654 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.05□□□□□ -0.16
TFF3Q07654 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms