Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
FOXA1P55317 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.54■□□□□ 0.08
FOXA1P55317 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
FOXA1P55317 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.54■□□□□ 0.08
FOXA1P55317 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
FOXA1P55317 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 AC091951.1-201ENST00000512854 2465 ntBASIC15.54■□□□□ 0.08
FOXA1P55317 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.54■□□□□ 0.08
FOXA1P55317 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
FOXA1P55317 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
FOXA1P55317 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
FOXA1P55317 AL691432.1-201ENST00000596308 1422 ntBASIC15.53■□□□□ 0.08
FOXA1P55317 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 AC112693.3-201ENST00000624819 1983 ntBASIC15.53■□□□□ 0.08
FOXA1P55317 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
FOXA1P55317 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.53■□□□□ 0.08
FOXA1P55317 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
FOXA1P55317 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 AC140113.2-201ENST00000604370 208 ntBASIC15.53■□□□□ 0.08
FOXA1P55317 SPTSSB-204ENST00000617024 1292 ntBASIC15.53■□□□□ 0.08
FOXA1P55317 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.53■□□□□ 0.08
FOXA1P55317 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.53■□□□□ 0.08
FOXA1P55317 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
FOXA1P55317 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.53■□□□□ 0.08
FOXA1P55317 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
FOXA1P55317 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA1P55317 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
FOXA1P55317 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA1P55317 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA1P55317 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA1P55317 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.52■□□□□ 0.08
FOXA1P55317 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.52■□□□□ 0.08
FOXA1P55317 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.52■□□□□ 0.08
FOXA1P55317 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.52■□□□□ 0.08
FOXA1P55317 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA1P55317 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.52■□□□□ 0.08
FOXA1P55317 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
FOXA1P55317 AL590627.1-203ENST00000421194 1026 ntBASIC15.52■□□□□ 0.08
FOXA1P55317 FDX1P1-201ENST00000449115 551 ntBASIC15.52■□□□□ 0.08
FOXA1P55317 AC105233.2-201ENST00000523697 349 ntBASIC15.52■□□□□ 0.08
FOXA1P55317 AF228730.5-201ENST00000530288 346 ntBASIC15.52■□□□□ 0.08
FOXA1P55317 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.52■□□□□ 0.08
FOXA1P55317 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.52■□□□□ 0.08
FOXA1P55317 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC15.52■□□□□ 0.08
FOXA1P55317 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA1P55317 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.52■□□□□ 0.08
FOXA1P55317 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.52■□□□□ 0.07
FOXA1P55317 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms