Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HMGCS2P54868 FLJ38576-201ENST00000623820 2459 ntBASIC18.35■□□□□ 0.53
HMGCS2P54868 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
HMGCS2P54868 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HMGCS2P54868 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGCS2P54868 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 AL607033.1-201ENST00000623900 1599 ntBASIC18.35■□□□□ 0.53
HMGCS2P54868 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 AC134312.5-201ENST00000568031 1313 ntBASIC18.35■□□□□ 0.53
HMGCS2P54868 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
HMGCS2P54868 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGCS2P54868 FAM21FP-201ENST00000426241 1131 ntBASIC18.35■□□□□ 0.53
HMGCS2P54868 AC012441.1-201ENST00000446669 685 ntBASIC18.35■□□□□ 0.53
HMGCS2P54868 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC18.35■□□□□ 0.53
HMGCS2P54868 AC093433.1-201ENST00000458048 571 ntBASIC18.35■□□□□ 0.53
HMGCS2P54868 AC106760.1-201ENST00000508690 800 ntBASIC18.35■□□□□ 0.53
HMGCS2P54868 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
HMGCS2P54868 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.35■□□□□ 0.53
HMGCS2P54868 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGCS2P54868 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
HMGCS2P54868 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGCS2P54868 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.35■□□□□ 0.53
HMGCS2P54868 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.35■□□□□ 0.53
HMGCS2P54868 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HMGCS2P54868 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGCS2P54868 AC080080.1-201ENST00000625121 2420 ntBASIC18.34■□□□□ 0.53
HMGCS2P54868 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HMGCS2P54868 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
HMGCS2P54868 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGCS2P54868 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGCS2P54868 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.34■□□□□ 0.53
HMGCS2P54868 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGCS2P54868 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGCS2P54868 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 AC097359.3-201ENST00000603982 1210 ntBASIC18.34■□□□□ 0.53
HMGCS2P54868 AC244669.2-201ENST00000612320 853 ntBASIC18.34■□□□□ 0.53
HMGCS2P54868 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HMGCS2P54868 METTL26-214ENST00000614890 801 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGCS2P54868 MIR6787-201ENST00000616675 61 ntBASIC18.34■□□□□ 0.53
HMGCS2P54868 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGCS2P54868 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HMGCS2P54868 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HMGCS2P54868 RNF165-205ENST00000588679 2904 ntBASIC18.34■□□□□ 0.53
HMGCS2P54868 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGCS2P54868 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGCS2P54868 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGCS2P54868 AL121723.1-201ENST00000445194 1519 ntBASIC18.33■□□□□ 0.53
HMGCS2P54868 AC022211.2-201ENST00000585075 2527 ntBASIC18.33■□□□□ 0.53
HMGCS2P54868 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HMGCS2P54868 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
HMGCS2P54868 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC18.33■□□□□ 0.53
HMGCS2P54868 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGCS2P54868 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGCS2P54868 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HMGCS2P54868 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
HMGCS2P54868 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGCS2P54868 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGCS2P54868 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.33■□□□□ 0.52
HMGCS2P54868 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms