Protein–RNA interactions for Protein: P53671

LIMK2, LIM domain kinase 2, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2P53671 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LIMK2P53671 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMK2P53671 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMK2P53671 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 AC011477.6-201ENST00000604980 1927 ntBASIC16.19■□□□□ 0.18
LIMK2P53671 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.19■□□□□ 0.18
LIMK2P53671 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIMK2P53671 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 PPT1-215ENST00000641471 2368 ntBASIC16.19■□□□□ 0.18
LIMK2P53671 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 HNRNPFP1-201ENST00000391730 1133 ntBASIC16.19■□□□□ 0.18
LIMK2P53671 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.19■□□□□ 0.18
LIMK2P53671 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.19■□□□□ 0.18
LIMK2P53671 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 KRT18P32-201ENST00000424695 1287 ntBASIC16.19■□□□□ 0.18
LIMK2P53671 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.19■□□□□ 0.18
LIMK2P53671 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 AC069335.1-201ENST00000489972 472 ntBASIC16.19■□□□□ 0.18
LIMK2P53671 AC067863.1-201ENST00000494933 530 ntBASIC16.19■□□□□ 0.18
LIMK2P53671 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
LIMK2P53671 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.19■□□□□ 0.18
LIMK2P53671 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.19■□□□□ 0.18
LIMK2P53671 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
LIMK2P53671 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIMK2P53671 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.18■□□□□ 0.18
LIMK2P53671 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.18■□□□□ 0.18
LIMK2P53671 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.18■□□□□ 0.18
LIMK2P53671 AL589702.1-201ENST00000641229 1509 ntBASIC16.18■□□□□ 0.18
LIMK2P53671 AP003680.1-201ENST00000598970 3660 ntBASIC16.18■□□□□ 0.18
LIMK2P53671 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.18■□□□□ 0.18
LIMK2P53671 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LIMK2P53671 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.17■□□□□ 0.18
LIMK2P53671 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMK2P53671 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
LIMK2P53671 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMK2P53671 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMK2P53671 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMK2P53671 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LIMK2P53671 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMK2P53671 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMK2P53671 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LIMK2P53671 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.17■□□□□ 0.18
LIMK2P53671 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
LIMK2P53671 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms