Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CX3CR1P49238 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC14.16□□□□□ -0.14
CX3CR1P49238 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.16□□□□□ -0.14
CX3CR1P49238 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 AC106730.1-201ENST00000566722 1090 ntBASIC14.16□□□□□ -0.14
CX3CR1P49238 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 MIR4321-201ENST00000592276 80 ntBASIC14.16□□□□□ -0.14
CX3CR1P49238 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 AC092865.6-201ENST00000642101 219 ntBASIC14.16□□□□□ -0.14
CX3CR1P49238 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.16□□□□□ -0.14
CX3CR1P49238 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
CX3CR1P49238 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.16□□□□□ -0.14
CX3CR1P49238 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.16□□□□□ -0.14
CX3CR1P49238 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CX3CR1P49238 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CX3CR1P49238 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.15□□□□□ -0.14
CX3CR1P49238 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CX3CR1P49238 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
CX3CR1P49238 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 RARRES2P8-201ENST00000566335 367 ntBASIC14.15□□□□□ -0.14
CX3CR1P49238 AC099522.2-201ENST00000607001 744 ntBASIC14.15□□□□□ -0.14
CX3CR1P49238 FAM197Y3-203ENST00000618346 717 ntBASIC14.15□□□□□ -0.14
CX3CR1P49238 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 AL136379.1-201ENST00000623471 2642 ntBASIC14.15□□□□□ -0.14
CX3CR1P49238 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
CX3CR1P49238 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
CX3CR1P49238 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC14.15□□□□□ -0.14
CX3CR1P49238 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
CX3CR1P49238 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.15□□□□□ -0.14
CX3CR1P49238 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.15□□□□□ -0.14
CX3CR1P49238 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
CX3CR1P49238 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CX3CR1P49238 BSG-215ENST00000618006 1329 ntTSL 2 BASIC14.15□□□□□ -0.15
CX3CR1P49238 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
CX3CR1P49238 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CX3CR1P49238 DBET-201ENST00000630918 3363 ntBASIC14.14□□□□□ -0.15
CX3CR1P49238 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CR1P49238 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.14□□□□□ -0.15
CX3CR1P49238 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC14.14□□□□□ -0.15
CX3CR1P49238 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
CX3CR1P49238 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.14□□□□□ -0.15
CX3CR1P49238 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CX3CR1P49238 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms