Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
HLA-DMBP28068 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.29□□□□□ -0.44
HLA-DMBP28068 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC023274.1-201ENST00000418278 595 ntBASIC12.28□□□□□ -0.44
HLA-DMBP28068 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 CD63-210ENST00000550776 870 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC096734.2-201ENST00000562054 433 ntBASIC12.28□□□□□ -0.44
HLA-DMBP28068 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC139530.3-201ENST00000620344 690 ntBASIC12.28□□□□□ -0.44
HLA-DMBP28068 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 AC136621.1-201ENST00000624017 2304 ntBASIC12.28□□□□□ -0.44
HLA-DMBP28068 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
HLA-DMBP28068 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
HLA-DMBP28068 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
HLA-DMBP28068 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 AMT-233ENST00000636522 1620 ntTSL 2 BASIC12.27□□□□□ -0.44
HLA-DMBP28068 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 HAUS4P1-201ENST00000406739 1145 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 RHOQP3-201ENST00000437982 621 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 DNAJB3-201ENST00000446806 729 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 KRT18P34-201ENST00000488218 1270 ntBASIC12.27□□□□□ -0.45
HLA-DMBP28068 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
HLA-DMBP28068 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
HLA-DMBP28068 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms