Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL8A1P27658 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
COL8A1P27658 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL8A1P27658 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.97□□□□□ -0.17
COL8A1P27658 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC13.97□□□□□ -0.17
COL8A1P27658 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.97□□□□□ -0.17
COL8A1P27658 AC007969.1-201ENST00000433675 447 ntBASIC13.97□□□□□ -0.17
COL8A1P27658 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 PTK7-212ENST00000476760 902 ntTSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 HIST2H2BC-201ENST00000498492 580 ntBASIC13.97□□□□□ -0.17
COL8A1P27658 AC106760.1-201ENST00000508690 800 ntBASIC13.97□□□□□ -0.17
COL8A1P27658 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 DUX4L45-201ENST00000566406 1057 ntBASIC13.97□□□□□ -0.17
COL8A1P27658 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC13.97□□□□□ -0.17
COL8A1P27658 RHOXF1P1-202ENST00000635473 501 ntBASIC13.97□□□□□ -0.17
COL8A1P27658 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.97□□□□□ -0.17
COL8A1P27658 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.97□□□□□ -0.17
COL8A1P27658 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
COL8A1P27658 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.97□□□□□ -0.17
COL8A1P27658 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.97□□□□□ -0.17
COL8A1P27658 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL8A1P27658 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
COL8A1P27658 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC13.96□□□□□ -0.17
COL8A1P27658 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC13.96□□□□□ -0.17
COL8A1P27658 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
COL8A1P27658 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC13.96□□□□□ -0.17
COL8A1P27658 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC13.96□□□□□ -0.17
COL8A1P27658 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.96□□□□□ -0.17
COL8A1P27658 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
COL8A1P27658 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC13.96□□□□□ -0.17
COL8A1P27658 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.96□□□□□ -0.17
COL8A1P27658 AL049840.4-201ENST00000602422 811 ntBASIC13.96□□□□□ -0.17
COL8A1P27658 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.96□□□□□ -0.17
COL8A1P27658 AL008638.5-201ENST00000623814 1298 ntBASIC13.96□□□□□ -0.17
COL8A1P27658 AL158212.4-201ENST00000624062 1286 ntBASIC13.96□□□□□ -0.17
COL8A1P27658 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC13.96□□□□□ -0.17
COL8A1P27658 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
COL8A1P27658 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
COL8A1P27658 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
COL8A1P27658 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC13.96□□□□□ -0.18
COL8A1P27658 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms