Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LTB4R2-202ENST00000528054 3092 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC15.1■□□□□ 0.01
COL5A1P20908 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC15.1■□□□□ 0.01
COL5A1P20908 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.1■□□□□ 0.01
COL5A1P20908 RNA5SP423-201ENST00000517127 109 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.1■□□□□ 0.01
COL5A1P20908 AC091271.1-201ENST00000611877 1162 ntBASIC15.1■□□□□ 0.01
COL5A1P20908 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
COL5A1P20908 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
COL5A1P20908 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
COL5A1P20908 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 CSH2-202ENST00000345366 598 ntTSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 ELK2AP-201ENST00000392510 1007 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 MIR1202-201ENST00000408529 83 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 BTBD6P1-201ENST00000412176 1267 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
COL5A1P20908 AC004898.1-201ENST00000451057 766 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 AL591846.1-201ENST00000451736 433 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 AL590640.2-201ENST00000457038 527 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 AC023310.1-201ENST00000554836 735 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.09■□□□□ 0.01
COL5A1P20908 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 AC106820.2-201ENST00000563775 3264 ntBASIC15.09■□□□□ 0.01
COL5A1P20908 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
COL5A1P20908 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.09■□□□□ 0.01
COL5A1P20908 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.09■□□□□ 0.01
COL5A1P20908 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.08■□□□□ 0.01
COL5A1P20908 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.08■□□□□ 0.01
COL5A1P20908 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL5A1P20908 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL5A1P20908 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.08■□□□□ 0.01
COL5A1P20908 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC15.08■□□□□ 0.01
COL5A1P20908 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC15.08■□□□□ 0.01
COL5A1P20908 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.08■□□□□ 0.01
COL5A1P20908 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
COL5A1P20908 GAPDHP40-201ENST00000505218 1006 ntBASIC15.08■□□□□ 0.01
COL5A1P20908 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.08■□□□□ 0.01
COL5A1P20908 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.08■□□□□ 0.01
COL5A1P20908 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.08■□□□□ 0.01
COL5A1P20908 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.08■□□□□ 0.01
COL5A1P20908 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
COL5A1P20908 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms