Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HMGA1P17096 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGA1P17096 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HMGA1P17096 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC16.48■□□□□ 0.23
HMGA1P17096 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.48■□□□□ 0.23
HMGA1P17096 AC007274.1-201ENST00000439805 662 ntBASIC16.48■□□□□ 0.23
HMGA1P17096 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.48■□□□□ 0.23
HMGA1P17096 USP32P1-208ENST00000506594 1164 ntBASIC16.48■□□□□ 0.23
HMGA1P17096 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGA1P17096 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.48■□□□□ 0.23
HMGA1P17096 AC124283.3-201ENST00000570869 594 ntBASIC16.48■□□□□ 0.23
HMGA1P17096 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HMGA1P17096 AC015936.2-201ENST00000593177 259 ntBASIC16.48■□□□□ 0.23
HMGA1P17096 AL512343.1-201ENST00000605837 169 ntBASIC16.48■□□□□ 0.23
HMGA1P17096 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGA1P17096 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HMGA1P17096 AL121723.1-201ENST00000445194 1519 ntBASIC16.48■□□□□ 0.23
HMGA1P17096 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGA1P17096 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGA1P17096 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HMGA1P17096 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
HMGA1P17096 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 AC124067.4-201ENST00000519691 2379 ntBASIC16.47■□□□□ 0.23
HMGA1P17096 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGA1P17096 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HMGA1P17096 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 AL162726.2-201ENST00000438986 1017 ntBASIC16.47■□□□□ 0.23
HMGA1P17096 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGA1P17096 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGA1P17096 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.47■□□□□ 0.23
HMGA1P17096 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.47■□□□□ 0.23
HMGA1P17096 AC017083.2-201ENST00000608069 979 ntBASIC16.47■□□□□ 0.23
HMGA1P17096 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGA1P17096 MIR6752-201ENST00000618442 71 ntBASIC16.47■□□□□ 0.23
HMGA1P17096 CU634019.7-201ENST00000624153 1185 ntBASIC16.47■□□□□ 0.23
HMGA1P17096 FP236241.2-201ENST00000624906 1185 ntBASIC16.47■□□□□ 0.23
HMGA1P17096 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGA1P17096 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
HMGA1P17096 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGA1P17096 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGA1P17096 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
HMGA1P17096 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGA1P17096 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGA1P17096 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGA1P17096 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 AC018695.7-201ENST00000624587 2492 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.46■□□□□ 0.23
HMGA1P17096 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 AC006449.5-201ENST00000610658 2098 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.46■□□□□ 0.23
HMGA1P17096 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HMGA1P17096 AC134915.1-201ENST00000426461 574 ntBASIC16.46■□□□□ 0.23
HMGA1P17096 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms