Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 AC106730.1-201ENST00000566722 1090 ntBASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 AC140113.2-201ENST00000604370 208 ntBASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.13□□□□□ -0.15
RHBDD3Q9Y3P4 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 AC092919.2-201ENST00000623631 1645 ntBASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 MED15P5-201ENST00000423150 992 ntBASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 KRT18P3-201ENST00000451602 1288 ntBASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 RNA5SP416-201ENST00000516838 111 ntBASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 AC027601.4-201ENST00000611259 610 ntBASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 AL513190.1-201ENST00000621254 727 ntBASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.12□□□□□ -0.15
RHBDD3Q9Y3P4 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 AC092850.2-201ENST00000623821 2697 ntBASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RHBDD3Q9Y3P4 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms