Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC39Q9UFE4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 DDT-204ENST00000404092 805 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 AC064836.3-201ENST00000607928 673 ntBASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 AC026748.1-201ENST00000624349 3251 ntBASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC39Q9UFE4 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 AL590627.1-203ENST00000421194 1026 ntBASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 ZNF259P1-201ENST00000407656 1365 ntBASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 SSR4P1-203ENST00000599569 2260 ntBASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC39Q9UFE4 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC39Q9UFE4 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC39Q9UFE4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC39Q9UFE4 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC18.64■□□□□ 0.58
CCDC39Q9UFE4 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC39Q9UFE4 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms