Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC008667.4-201ENST00000607370 168 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 ACTL9-202ENST00000612068 1252 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC020765.3-201ENST00000613051 740 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC148477.8-201ENST00000624298 468 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC129492.6-201ENST00000611383 1305 ntBASIC14.1□□□□□ -0.15
NKX3-1Q99801 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.1□□□□□ -0.15
NKX3-1Q99801 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
NKX3-1Q99801 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 AL031284.1-201ENST00000419297 478 ntBASIC14.09□□□□□ -0.15
NKX3-1Q99801 RNPS1P1-201ENST00000507437 918 ntBASIC14.09□□□□□ -0.15
NKX3-1Q99801 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 IGHV3-65-201ENST00000523210 341 ntBASIC14.09□□□□□ -0.15
NKX3-1Q99801 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 AL356488.2-201ENST00000602755 427 ntBASIC14.09□□□□□ -0.15
NKX3-1Q99801 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 HLA-A-201ENST00000376802 1334 ntBASIC14.09□□□□□ -0.15
NKX3-1Q99801 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
NKX3-1Q99801 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.09□□□□□ -0.15
NKX3-1Q99801 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX3-1Q99801 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.08□□□□□ -0.15
NKX3-1Q99801 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.08□□□□□ -0.15
NKX3-1Q99801 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
NKX3-1Q99801 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC14.08□□□□□ -0.15
NKX3-1Q99801 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX3-1Q99801 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX3-1Q99801 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
NKX3-1Q99801 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 CIPC-205ENST00000555437 566 ntTSL 3 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
NKX3-1Q99801 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
NKX3-1Q99801 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms