Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.08□□□□□ -0.47
LINC00477Q96M19 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.47
LINC00477Q96M19 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC073439.1-201ENST00000624121 1774 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC079781.3-201ENST00000449110 356 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 RNA5SP415-201ENST00000517246 115 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AL662844.1-201ENST00000546340 181 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC002347.1-201ENST00000569543 541 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 AP001005.1-201ENST00000571755 1248 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 LITAF-211ENST00000572255 516 ntTSL 4 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 MED16-214ENST00000617672 554 ntTSL 5 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AL691432.3-201ENST00000621860 400 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC010507.1-201ENST00000633895 436 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 OR2I1P-210ENST00000642037 4691 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 TMBIM7P-203ENST00000641617 1718 ntBASIC12.08□□□□□ -0.48
LINC00477Q96M19 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
LINC00477Q96M19 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.08□□□□□ -0.48
LINC00477Q96M19 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 WASH6P-202ENST00000359512 1437 ntBASIC12.07□□□□□ -0.48
LINC00477Q96M19 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
LINC00477Q96M19 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC12.07□□□□□ -0.48
LINC00477Q96M19 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC12.07□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms