Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 RPSAP36-202ENST00000494591 1261 ntBASIC17.29■□□□□ 0.36
LRCH3Q96II8 PTK2-225ENST00000520892 571 ntTSL 4 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 AL354718.3-201ENST00000616414 581 ntBASIC17.29■□□□□ 0.36
LRCH3Q96II8 AP001505.2-201ENST00000616815 443 ntBASIC17.29■□□□□ 0.36
LRCH3Q96II8 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 CR382287.1-201ENST00000623954 586 ntBASIC17.29■□□□□ 0.36
LRCH3Q96II8 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LRCH3Q96II8 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LRCH3Q96II8 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 AC011676.5-201ENST00000624864 2660 ntBASIC17.28■□□□□ 0.36
LRCH3Q96II8 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 NKILA-202ENST00000614771 2598 ntBASIC17.28■□□□□ 0.36
LRCH3Q96II8 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 CNN2P8-201ENST00000421872 913 ntBASIC17.28■□□□□ 0.36
LRCH3Q96II8 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 AC093433.1-201ENST00000458048 571 ntBASIC17.28■□□□□ 0.36
LRCH3Q96II8 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 AL096828.3-201ENST00000615354 462 ntBASIC17.28■□□□□ 0.36
LRCH3Q96II8 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LRCH3Q96II8 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LRCH3Q96II8 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 INTS4P2-202ENST00000614726 2019 ntBASIC17.27■□□□□ 0.36
LRCH3Q96II8 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 LINC01451-201ENST00000623792 534 ntBASIC17.27■□□□□ 0.36
LRCH3Q96II8 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LRCH3Q96II8 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LRCH3Q96II8 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
LRCH3Q96II8 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
LRCH3Q96II8 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.27■□□□□ 0.35
LRCH3Q96II8 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LRCH3Q96II8 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LRCH3Q96II8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LRCH3Q96II8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
LRCH3Q96II8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LRCH3Q96II8 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LRCH3Q96II8 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LRCH3Q96II8 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LRCH3Q96II8 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms