Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 GGT4P-201ENST00000623672 1708 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 JPT2-203ENST00000382711 894 ntTSL 4 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AL357563.1-201ENST00000404728 395 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AP001582.1-201ENST00000525856 295 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 MIR4321-201ENST00000592276 80 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 AL627230.2-201ENST00000613254 655 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 AC005618.3-201ENST00000624928 458 ntBASIC15.91■□□□□ 0.14
TTC28Q96AY4 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TTC28Q96AY4 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TTC28Q96AY4 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 AL157791.1-201ENST00000553667 1699 ntBASIC15.9■□□□□ 0.14
TTC28Q96AY4 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 AL136309.1-201ENST00000403917 691 ntBASIC15.9■□□□□ 0.14
TTC28Q96AY4 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 RPL18AP3-201ENST00000462885 528 ntBASIC15.9■□□□□ 0.14
TTC28Q96AY4 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 TP53-221ENST00000615910 1149 ntTSL 5 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 KRT8P4-201ENST00000509735 1454 ntBASIC15.9■□□□□ 0.14
TTC28Q96AY4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 GCK-202ENST00000345378 2421 ntTSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 FAM8A4P-201ENST00000435433 1213 ntBASIC15.9■□□□□ 0.14
TTC28Q96AY4 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 RN7SL396P-201ENST00000471086 295 ntBASIC15.9■□□□□ 0.14
TTC28Q96AY4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TTC28Q96AY4 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TTC28Q96AY4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 ENPP7P8-202ENST00000527856 1345 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 BCAS2P2-201ENST00000425064 674 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 CAP2P1-201ENST00000557743 1390 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 AQP7P5-201ENST00000428759 1049 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 AQP7P4-201ENST00000447083 1042 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 AQP7P2-201ENST00000453967 1041 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 AC084752.1-201ENST00000509766 622 ntBASIC15.89■□□□□ 0.13
TTC28Q96AY4 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TTC28Q96AY4 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.89■□□□□ 0.13
TTC28Q96AY4 AC025262.2-201ENST00000623975 1056 ntBASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms