Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 NKAIN1P1-201ENST00000435754 582 ntBASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 AL596276.2-201ENST00000447525 331 ntBASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 IFT20-206ENST00000578122 834 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 IFT20-208ENST00000578985 831 ntTSL 3 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 AC091544.8-201ENST00000619490 361 ntBASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 AC006453.4-201ENST00000636949 1252 ntBASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SMC1BQ8NDV3 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AC068880.1-201ENST00000507289 2297 ntBASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 SERF2-206ENST00000409291 807 ntTSL 3 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 RNA5SP486-201ENST00000515961 83 ntBASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AC044849.1-201ENST00000519737 1188 ntBASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 RN7SL574P-201ENST00000581512 297 ntBASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AC007663.3-201ENST00000609632 465 ntBASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
SMC1BQ8NDV3 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 MIR6756-201ENST00000616240 63 ntBASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 COX6A1P2-201ENST00000620597 330 ntBASIC18.85■□□□□ 0.61
SMC1BQ8NDV3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms