Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AP3S2-216ENST00000617003 1561 ntBASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 AC046158.3-201ENST00000624947 2558 ntBASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.19■□□□□ 0.02
CCDC116Q8IYX3 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AC134407.2-201ENST00000625089 1978 ntBASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AC084121.4-201ENST00000641598 221 ntBASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 AF228730.8-201ENST00000642140 221 ntBASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CCDC116Q8IYX3 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 HLA-H-201ENST00000383620 1096 ntBASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 FAM58DP-201ENST00000428076 619 ntBASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CCDC116Q8IYX3 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC116Q8IYX3 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms