Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 AC073621.1-201ENST00000392730 636 ntBASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 KRT18P27-201ENST00000427733 1299 ntBASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 KRT18P31-201ENST00000506277 1292 ntBASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 AC136632.2-201ENST00000512891 861 ntBASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 AL121772.3-201ENST00000610840 674 ntBASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
NUDCD3Q8IVD9 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 AC105250.1-201ENST00000509378 2057 ntBASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 AC090616.6-203ENST00000579186 1945 ntBASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.02■□□□□ 0.15
NUDCD3Q8IVD9 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 IGHV3-65-201ENST00000523210 341 ntBASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 AL031055.1-201ENST00000606362 631 ntBASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 AC093458.2-201ENST00000623150 629 ntBASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 AL009178.2-201ENST00000597278 2719 ntBASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
NUDCD3Q8IVD9 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16■□□□□ 0.15
NUDCD3Q8IVD9 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms