Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 RPSAP43-201ENST00000402237 625 ntBASIC16.98■□□□□ 0.31
LIG3P49916 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
LIG3P49916 UPF3AP3-201ENST00000420996 769 ntBASIC16.98■□□□□ 0.31
LIG3P49916 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.98■□□□□ 0.31
LIG3P49916 MCCD1P2-201ENST00000423228 335 ntBASIC16.98■□□□□ 0.31
LIG3P49916 GPX1P2-201ENST00000429271 606 ntBASIC16.98■□□□□ 0.31
LIG3P49916 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.98■□□□□ 0.31
LIG3P49916 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.98■□□□□ 0.31
LIG3P49916 AC112482.1-201ENST00000492080 688 ntBASIC16.98■□□□□ 0.31
LIG3P49916 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.98■□□□□ 0.31
LIG3P49916 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.98■□□□□ 0.31
LIG3P49916 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.98■□□□□ 0.31
LIG3P49916 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.98■□□□□ 0.31
LIG3P49916 PDPK2P-202ENST00000562415 1191 ntBASIC16.98■□□□□ 0.31
LIG3P49916 MIR3687-2-201ENST00000577708 61 ntBASIC16.98■□□□□ 0.31
LIG3P49916 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.98■□□□□ 0.31
LIG3P49916 MIR3687-1-201ENST00000614492 61 ntBASIC16.98■□□□□ 0.31
LIG3P49916 REXO1L3P-201ENST00000622202 1288 ntBASIC16.98■□□□□ 0.31
LIG3P49916 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.98■□□□□ 0.31
LIG3P49916 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.98■□□□□ 0.31
LIG3P49916 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
LIG3P49916 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIG3P49916 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LIG3P49916 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.97■□□□□ 0.31
LIG3P49916 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
LIG3P49916 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.97■□□□□ 0.31
LIG3P49916 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 AC106881.1-201ENST00000605849 3329 ntBASIC16.97■□□□□ 0.31
LIG3P49916 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.97■□□□□ 0.31
LIG3P49916 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
LIG3P49916 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 MIR1233-2-201ENST00000408138 82 ntBASIC16.97■□□□□ 0.31
LIG3P49916 MIR1233-1-201ENST00000408722 82 ntBASIC16.97■□□□□ 0.31
LIG3P49916 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.97■□□□□ 0.31
LIG3P49916 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
LIG3P49916 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.97■□□□□ 0.31
LIG3P49916 AC139530.3-201ENST00000620344 690 ntBASIC16.97■□□□□ 0.31
LIG3P49916 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.97■□□□□ 0.31
LIG3P49916 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC16.97■□□□□ 0.31
LIG3P49916 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
LIG3P49916 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC16.96■□□□□ 0.31
LIG3P49916 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
LIG3P49916 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.96■□□□□ 0.31
LIG3P49916 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LIG3P49916 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.96■□□□□ 0.31
LIG3P49916 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.96■□□□□ 0.31
LIG3P49916 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
LIG3P49916 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.96■□□□□ 0.31
LIG3P49916 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC16.96■□□□□ 0.31
LIG3P49916 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.96■□□□□ 0.31
LIG3P49916 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIG3P49916 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms